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Code to produce the heatmap of Seurat correlation matrix vs cotan heatmap on selected genes
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Oct · Princomp () outputs seemingly wrong PCA scores with cor=TRUE input argument d = data frame (x = c ( ) y = c ( )) d = as data frame (scale (d center=TRUE scale = TRUE)) the correlation matrix and the covariance matrix are the same all equal (cov (d) cor (d)) this equals TRUE meaning …
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Add more information for gene expression matrix Heatmaps are very popular to visualize gene expression matrix Rows in the matrix correspond to genes and more information on these genes can be attached after the expression heatmap In following example the big heatmap visualizes relative expression for genes (expression for each …